PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g33900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 331aa    MW: 37325.5 Da    PI: 8.4542
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g33900genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1419.6e-441132642137
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 
                 a+kkdrhski T+ g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+eWLl+++k ai el++               ss++++ce  s + ++s+ ++
  CA03g33900 113 AAKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDMLGFDKASKTVEWLLTKSKSAINELVQKinkencngttsisASSPSESCEVISGVINESATTN 211
                 78**************************************************************99999888877765555566644444444332222 PP

         TCP  88 g...kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                 +      k+++k+ ks++++  +  +akesr++arararert+ k++++nk+n
  CA03g33900 212 TtnnVVHKQQKKKVKSTRRTIFHPVVAKESRNQARARARERTKIKNSLNNKNN 264
                 2443333333345555555555789999*******************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-47114257IPR005333Transcription factor, TCP
PROSITE profilePS5136936.54115173IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.457239256IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MQPSGNYSPN NSSSSSYFNI DIPSAYMQYE PEFVQYFHDL HFSQPPHDQY NLDTSIMVEE  60
DSNKLDKQEE EDHEELVLKS SKNKKDEMSS TTTSTIRRKN NKCVAGAGAG AGAAKKDRHS  120
KINTAHGPRD RRMRLSLEIA RKFFNLQDML GFDKASKTVE WLLTKSKSAI NELVQKINKE  180
NCNGTTSISA SSPSESCEVI SGVINESATT NTTNNVVHKQ QKKKVKSTRR TIFHPVVAKE  240
SRNQARARAR ERTKIKNSLN NKNNIGESMD DDHQSGIQGY KTNNVMNVVD NFNLVDTGNW  300
SPFIFNYHDI NTEISQEVYD LISLVRNCLC *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567552.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLM1A4H51e-135M1A4H5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000145721e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-28TCP domain protein 12